......

tasks/multiqc.wdl

@@ -7,6 +7,7 @@ task multiqc {
 	Array[File] txt2
 
 	Array[File] bamqc_zip
+	Array[File] rnaseq_zip
 
 	String docker
 	String cluster_config
@@ -26,7 +27,10 @@ task multiqc {
 		do
 		  tar -zxvf $i -C /cromwell_root/tmp/bamqc
 		done
-
+		for i in ${sep=" " rnaseq_zip}
+		do
+		  tar -zxvf $i -C /cromwell_root/tmp/rnaqc
+		done
 		
 
 		multiqc /cromwell_root/tmp/