Zhihui
5 years ago
1 changed files with 5 additions and 1 deletions
+ 5
- 1
tasks/multiqc.wdl
View File
| Array[File] txt2 | Array[File] txt2 | ||||
| Array[File] bamqc_zip | Array[File] bamqc_zip | ||||
| Array[File] rnaseq_zip | |||||
| String docker | String docker | ||||
| String cluster_config | String cluster_config | ||||
| do | do | ||||
| tar -zxvf $i -C /cromwell_root/tmp/bamqc | tar -zxvf $i -C /cromwell_root/tmp/bamqc | ||||
| done | done | ||||
| for i in ${sep=" " rnaseq_zip} | |||||
| do | |||||
| tar -zxvf $i -C /cromwell_root/tmp/rnaqc | |||||
| done | |||||
| multiqc /cromwell_root/tmp/ | multiqc /cromwell_root/tmp/ |
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