Array[File] cnvkit_result= glob("${sample_id}/cnvkit_output/*") | Array[File] cnvkit_result= glob("${sample_id}/cnvkit_output/*") | ||||
Array[File] AA_result= glob("${sample_id}/${sample_id}_AA_results/*") | Array[File] AA_result= glob("${sample_id}/${sample_id}_AA_results/*") | ||||
File seed_bed="${sample_id}/${sample_id}_AA_CNV_SEEDS.bed" | File seed_bed="${sample_id}/${sample_id}_AA_CNV_SEEDS.bed" | ||||
File mat_expression = "${sample_id}.txt" | |||||
} | } | ||||
} | } |