@@ -34,6 +34,7 @@ task prepareaa { | |||
Array[File] cnvkit_result= glob("${sample_id}/cnvkit_output/*") | |||
Array[File] AA_result= glob("${sample_id}/${sample_id}_AA_results/*") | |||
File seed_bed="${sample_id}/${sample_id}_AA_CNV_SEEDS.bed" | |||
File mat_expression = "${sample_id}.txt" | |||
} | |||
} |