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README.md
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| $ open-choppy-env | $ open-choppy-env | ||||
| # Install the APP | # Install the APP | ||||
| $ choppy install YaqingLiu/variant-calling [-f] | |||||
| $ choppy install liuruimei/prepareaa [-f] | |||||
| # List the parameters | # List the parameters | ||||
| $ choppy samples YaqingLiu/variant-calling-latest [--no-default] | |||||
| $ choppy samples liuruimei/prepareaa-latest --output sample.csv | |||||
| # Submit you task with the `samples.csv file` and `project name` | # Submit you task with the `samples.csv file` and `project name` | ||||
| $ choppy batch YaqingLiu/variant-calling-latest samples.csv -p Project [-l project:Label] | |||||
| $ choppy batch liuruimei/prepareaa-latest samples.csv -p Project [-l project:Label] | |||||
| # Query the status of all tasks in the project | # Query the status of all tasks in the project | ||||
| $ choppy query -L project:Label | grep "status" | $ choppy query -L project:Label | grep "status" |
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