更新 'tasks/batch.wdl'

tasks/batch.wdl

@@ -36,7 +36,7 @@ task batch {
         cd /cromwell_root/tmp/cnvkit
         mkdir results
         cnvkit.py batch -p $nt ${sep=' ' tumor_bam} --normal ${sep=' ' normal_bam} \
-        --method ${method} \
+        --method ${method} --segment-method ${segment_method} \
         ${access_opt} ${annotate_opt} \
         --fasta hg_ref.fa ${reference_opt} \
         --output-reference ${sample_id}.reference.cnn \