@@ -1,7 +1,6 @@ | |||
task access { | |||
File faidx | |||
File fasta | |||
File bed | |||
String method | |||
String min_gap_size | |||
String docker | |||
@@ -10,8 +9,6 @@ task access { | |||
command <<< | |||
if [ ${method} == "wgs" ]; then | |||
cp ${bed} access-mappable.bed | |||
else | |||
cnvkit.py access -s ${min_gap_size} -o access-mappable.bed ${fasta} | |||
fi | |||
>>> |