linzipeng
6 years ago
1 changed files with 1 additions and 1 deletions
+ 1
- 1
tasks/Dedup.wdl
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| set -e | set -e | ||||
| cp ${unsorted_bam} ./ | cp ${unsorted_bam} ./ | ||||
| input = basename ${unsorted_bam} | input = basename ${unsorted_bam} | ||||
| /src/Bismark-0.18.2/deduplicate_bismark -p --bam ./$input | |||||
| /src/Bismark-0.18.2/deduplicate_bismark -p --bam ./${input} | |||||
| >>> | >>> | ||||
| runtime { | runtime { | ||||
| docker:docker | docker:docker |
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