linzipeng
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tasks/Call_meth.wdl
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| output { | output { | ||||
| File bedGraph = "${sample}_R1_val_1_bismark_bt2_pe.bedGraph.gz" | File bedGraph = "${sample}_R1_val_1_bismark_bt2_pe.bedGraph.gz" | ||||
| File cov = "${sample}_R1_val_1_bismark_bt2_pe.bismark.cov.gz" | File cov = "${sample}_R1_val_1_bismark_bt2_pe.bismark.cov.gz" | ||||
| File M-bias = "${sample}_R1_val_1_bismark_bt2_pe.M-bias.txt" | |||||
| File splitting_report = "${sample}_R1_val_1_bismark_bt2_pe_splitting_report.txt" | File splitting_report = "${sample}_R1_val_1_bismark_bt2_pe_splitting_report.txt" | ||||
| File CHG_context = "CHG_context_{sample}_R1_val_1_bismark_bt2_pe.txt" | File CHG_context = "CHG_context_{sample}_R1_val_1_bismark_bt2_pe.txt" | ||||
| File CHH_context = "CHH_context_{sample}_R1_val_1_bismark_bt2_pe.txt" | File CHH_context = "CHH_context_{sample}_R1_val_1_bismark_bt2_pe.txt" |
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