linzipeng
6 years ago
1 changed files with 2 additions and 12 deletions
+ 2
- 12
workflow.wdl
View File
| File ref_dir | File ref_dir | ||||
| call Trim.Trim as Trim { | |||||
| input: | |||||
| sample=sample, | |||||
| fastq_1=fastq_1, | |||||
| fastq_2=fastq_2, | |||||
| docker=docker, | |||||
| disk_size=disk_size, | |||||
| cluster_config=cluster_config | |||||
| } | |||||
| call Mapping.Mapping as Mapping { | call Mapping.Mapping as Mapping { | ||||
| input: | input: | ||||
| sample=sample, | sample=sample, | ||||
| ref_dir=ref_dir, | ref_dir=ref_dir, | ||||
| trim_read1=Trim.trim_read1, | |||||
| trim_read2=Trim.trim_read2, | |||||
| trim_read1=fastq_1, | |||||
| trim_read2=fastq_2, | |||||
| docker=docker, | docker=docker, | ||||
| disk_size=disk_size, | disk_size=disk_size, | ||||
| cluster_config=cluster_config | cluster_config=cluster_config |
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