测试修改临时

tasks/Call_meth.wdl

@@ -22,12 +22,12 @@ command <<<
 	}
 
 	output {
-		File bedGraph = "${sample}_R1_val_1_bismark_bt2_pe.bedGraph.gz"
-		File cov = "${sample}_R1_val_1_bismark_bt2_pe.bismark.cov.gz"
-		File splitting_report = "${sample}_R1_val_1_bismark_bt2_pe_splitting_report.txt"
-		File CHG_context = "CHG_context_{sample}_R1_val_1_bismark_bt2_pe.txt"
-		File CHH_context = "CHH_context_{sample}_R1_val_1_bismark_bt2_pe.txt"
-		File CpG_context = "CpG_context_{sample}_R1_val_1_bismark_bt2_pe.txt"
+		File bedGraph = "${sample}_R1_bismark_bt2_pe.bedGraph.gz"
+		File cov = "${sample}_R1_bismark_bt2_pe.bismark.cov.gz"
+		File splitting_report = "${sample}_R1_bismark_bt2_pe_splitting_report.txt"
+		File CHG_context = "CHG_context_${sample}_R1_bismark_bt2_pe.txt"
+		File CHH_context = "CHH_context_${sample}_R1_bismark_bt2_pe.txt"
+		File CpG_context = "CpG_context_${sample}_R1_bismark_bt2_pe.txt"
 	}
 }
 

tasks/Dedup.wdl

@@ -22,7 +22,7 @@ task Dedup {
 	}
 
 	output {
-		File Dedup_bam = "${sample}_R1_val_1_bismark_bt2_pe.deduplicated.bam"
+		File Dedup_bam = "${sample}_R1_bismark_bt2_pe.deduplicated.bam"
 	}
 }
 

tasks/Mapping.wdl

@@ -23,6 +23,6 @@ task Mapping {
     	dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/"
 	}
 	output {
-		File unsorted_bam = "${sample}_R1_val_1_bismark_bt2_pe.bam"
+		File unsorted_bam = "${sample}_R1_bismark_bt2_pe.bam"
 	}
 }