Target-Seq-FUSCC/inputs

{
  "{{ project_name }}.fasta": "hg19_nochr.fa",
  "{{ project_name }}.ref_dir": "oss://pgx-reference-data/hg19/",
  "{{ project_name }}.dbsnp": "dbsnp_138.hg19_nochr_sorted.vcf",
  "{{ project_name }}.dbsnp_dir": "oss://pgx-reference-data/hg19/",
  "{{ project_name }}.SENTIEON_INSTALL_DIR": "/opt/sentieon-genomics",
  "{{ project_name }}.dbmills_dir": "oss://pgx-reference-data/hg19/",
  "{{ project_name }}.db_mills": "Mills_and_1000G_gold_standard.indels.hg19_nochr.vcf",
  "{{ project_name }}.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2019.11.28",
  "{{ project_name }}.sample": "{{ sample_name }}",
  "{{ project_name }}.tumor_fastq_2": "{{ tumor_fastq_2 }}",
  "{{ project_name }}.tumor_fastq_1": "{{ tumor_fastq_1 }}",
  "{{ project_name }}.normal_fastq_1": "{{ normal_fastq_1 }}",
  "{{ project_name }}.normal_fastq_2": "{{ normal_fastq_2 }}",
  "{{ project_name }}.disk_size": "{{ disk_size }}",
  "{{ project_name }}.cluster_config": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc",
  "{{ project_name }}.regions": "{{ region if region != '' else 'oss://pgx-source-data/sjzp/2020/141gene_twist_merged.bed' }}"
}