junshang/rnaseq-engineering - Choppy for Reproducible Omics Pipeline

aliyun clinico-omics

stead99 a63567d8b4 revised ballgown		5 年前
tasks	add qualimap	5 年前
defaults	revised ballgown	5 年前
inputs	add qualimap	5 年前
readme.md	readme revised	5 年前
samples.csv	revised input	5 年前
workflow.wdl	add qualimap	5 年前

readme.md

Author: Jun Shang

Email: shangjunv@163.com

Last Updates: 29/06/2020

Requirements

choppy
Ali-Cloud

$ source activate choppy/open-choppy-env
$ choppy install junshang/rnaseq-engineering
$ choppy apps

quick start

$ choppy samples junshang/rnaseq-engineering-latest > samples.csv
$ choppy batch junshang/rnaseq-engineering-latest samples.csv -p Your_project_name