junshang/rnaseq-engineering - Choppy for Reproducible Omics Pipeline

clinico-omics aliyun

stead99 a63567d8b4 revised ballgown		5年前
tasks	add qualimap	5年前
defaults	revised ballgown	5年前
inputs	add qualimap	5年前
readme.md	readme revised	5年前
samples.csv	revised input	5年前
workflow.wdl	add qualimap	5年前

readme.md

Author: Jun Shang

Email: shangjunv@163.com

Last Updates: 29/06/2020

Requirements

choppy
Ali-Cloud

$ source activate choppy/open-choppy-env
$ choppy install junshang/rnaseq-engineering
$ choppy apps

quick start

$ choppy samples junshang/rnaseq-engineering-latest > samples.csv
$ choppy batch junshang/rnaseq-engineering-latest samples.csv -p Your_project_name