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README.md
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| | FDU_D5 | 200 | oss://choppy-app-example-data/RNAseq/Downsampling_Quartet_RNAseqQC_12samples/Quartet_RNA_ILM_NovaSeq_RiboZero_FDU_D5_1_20190710_CleanData_R1_400k.gz | oss://choppy-app-example-data/RNAseq/Downsampling_Quartet_RNAseqQC_12samples/Quartet_RNA_ILM_NovaSeq_RiboZero_FDU_D5_1_20190710_CleanData_R2_400k.gz | false | true | true | | | FDU_D5 | 200 | oss://choppy-app-example-data/RNAseq/Downsampling_Quartet_RNAseqQC_12samples/Quartet_RNA_ILM_NovaSeq_RiboZero_FDU_D5_1_20190710_CleanData_R1_400k.gz | oss://choppy-app-example-data/RNAseq/Downsampling_Quartet_RNAseqQC_12samples/Quartet_RNA_ILM_NovaSeq_RiboZero_FDU_D5_1_20190710_CleanData_R2_400k.gz | false | true | true | | ||||
| - sample_id 一般设置为文件输出前缀 | |||||
| - read1 R1 fastq 文件所在路径 | |||||
| - read2 R2 fastq 文件所在路径 | |||||
| - disk_size 磁盘空间，每一步中间文件大小做调整 | |||||
| - sample_id： 一般设置为文件输出前缀 | |||||
| - read1： R1 fastq 文件所在路径 | |||||
| - read2： R2 fastq 文件所在路径 | |||||
| - disk_size： 磁盘空间，每一步中间文件大小做调整 | |||||
| - pre_alignment_qc: 执行 fastqc 和 fastq screen 设置为 true，反之设置为 false | - pre_alignment_qc: 执行 fastqc 和 fastq screen 设置为 true，反之设置为 false | ||||
| - qualimap_qc: 执行 qualimap bamqc 设置为 true，反之设置为 false | - qualimap_qc: 执行 qualimap bamqc 设置为 true，反之设置为 false | ||||
| - trim_adapter: 使用 fastp 去 adapter 设置为 true，反之设置为 false | - trim_adapter: 使用 fastp 去 adapter 设置为 true，反之设置为 false |
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