2 changed files with 6 additions and 7 deletions
+ 0
- 1
tasks/fastqc.wdl
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| File read1 | File read1 | ||||
| File read2 | File read2 | ||||
| String docker | String docker | ||||
| String docker | |||||
| String cluster | String cluster | ||||
| String disk_size | String disk_size | ||||
+ 6
- 6
workflow.wdl
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| read2=read2, | read2=read2, | ||||
| docker = fastqc_docker, | docker = fastqc_docker, | ||||
| cluster = fastqc_cluster, | cluster = fastqc_cluster, | ||||
| disk_size= disk_size | |||||
| disk_size = disk_size | |||||
| } | } | ||||
| call fastqscreen.fastqscreen as fastqscreen { | call fastqscreen.fastqscreen as fastqscreen { | ||||
| input: | input: | ||||
| read1=read1, | |||||
| read2=read2, | |||||
| read1 = read1, | |||||
| read2 = read2, | |||||
| docker = fastqscreen_docker, | docker = fastqscreen_docker, | ||||
| cluster = fastqscreen_cluster, | cluster = fastqscreen_cluster, | ||||
| screen_ref_dir=screen_ref_dir, | |||||
| fastq_screen_conf=fastq_screen_conf, | |||||
| disk_size= disk_size | |||||
| screen_ref_dir = screen_ref_dir, | |||||
| fastq_screen_conf = fastq_screen_conf, | |||||
| disk_size = disk_size | |||||
| } | } | ||||
| call hisat2.hisat2 as hisat2 { | call hisat2.hisat2 as hisat2 { |
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