revised fastqc

tasks/fastqc.wdl

@@ -2,7 +2,6 @@ task fastqc {
 	File read1
 	File read2
 	String docker
-	String docker
 	String cluster
 	String disk_size
 

workflow.wdl

@@ -35,18 +35,18 @@ workflow {{ project_name }} {
 		read2=read2,
 		docker = fastqc_docker,
 		cluster = fastqc_cluster,
-		disk_size= disk_size
+		disk_size = disk_size
 		}
 			
 	call fastqscreen.fastqscreen as fastqscreen {
 		input:
-		read1=read1,
-		read2=read2,
+		read1 = read1,
+		read2 = read2,
 		docker = fastqscreen_docker,
 		cluster = fastqscreen_cluster,
-		screen_ref_dir=screen_ref_dir,
-		fastq_screen_conf=fastq_screen_conf,
-		disk_size= disk_size
+		screen_ref_dir = screen_ref_dir,
+		fastq_screen_conf = fastq_screen_conf,
+		disk_size = disk_size
 		}	
 	
 	call hisat2.hisat2 as hisat2 {