1 changed files with 5 additions and 1 deletions
+ 5
- 1
README.md
View File
| ``` | ``` | ||||
| $ source activate choppy/open-choppy-env | $ source activate choppy/open-choppy-env | ||||
| $ choppy install junshang/rnaseq-engineering | |||||
| $ choppy install junshang/rnaseq-engineering:tag | |||||
| $ choppy apps | $ choppy apps | ||||
| ``` | ``` | ||||
| $ choppy samples junshang/rnaseq-engineering-latest > samples.csv | $ choppy samples junshang/rnaseq-engineering-latest > samples.csv | ||||
| $ choppy batch junshang/rnaseq-engineering-latest samples.csv -p Your_project_name | $ choppy batch junshang/rnaseq-engineering-latest samples.csv -p Your_project_name | ||||
| ``` | ``` | ||||
| | sample_id | disk_size | read1 | read2 | pre_alignment_qc | qualimap_qc | trim_adapter | | |||||
| | --------- | --------- | ---------------------------------------------------------------------------------------------------------------------------------------------------- | ---------------------------------------------------------------------------------------------------------------------------------------------------- | ---------------- | ----------- | ------------ | | |||||
| | FDU_D5 | 200 | oss://choppy-app-example-data/RNAseq/Downsampling_Quartet_RNAseqQC_12samples/Quartet_RNA_ILM_NovaSeq_RiboZero_FDU_D5_1_20190710_CleanData_R1_400k.gz | oss://choppy-app-example-data/RNAseq/Downsampling_Quartet_RNAseqQC_12samples/Quartet_RNA_ILM_NovaSeq_RiboZero_FDU_D5_1_20190710_CleanData_R2_400k.gz | false | true | true | |
Loading…