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README.md
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| ``` | |||
| $ source activate choppy/open-choppy-env | |||
| $ choppy install junshang/rnaseq-engineering | |||
| $ choppy install junshang/rnaseq-engineering:tag | |||
| $ choppy apps | |||
| ``` | |||
| @@ -21,3 +21,7 @@ $ choppy apps | |||
| $ choppy samples junshang/rnaseq-engineering-latest > samples.csv | |||
| $ choppy batch junshang/rnaseq-engineering-latest samples.csv -p Your_project_name | |||
| ``` | |||
| | sample_id | disk_size | read1 | read2 | pre_alignment_qc | qualimap_qc | trim_adapter | | |||
| | --------- | --------- | ---------------------------------------------------------------------------------------------------------------------------------------------------- | ---------------------------------------------------------------------------------------------------------------------------------------------------- | ---------------- | ----------- | ------------ | | |||
| | FDU_D5 | 200 | oss://choppy-app-example-data/RNAseq/Downsampling_Quartet_RNAseqQC_12samples/Quartet_RNA_ILM_NovaSeq_RiboZero_FDU_D5_1_20190710_CleanData_R1_400k.gz | oss://choppy-app-example-data/RNAseq/Downsampling_Quartet_RNAseqQC_12samples/Quartet_RNA_ILM_NovaSeq_RiboZero_FDU_D5_1_20190710_CleanData_R2_400k.gz | false | true | true | | |||
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