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revise samtools sort -m

tags/v0.1.0
stead99 hace 4 años
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666f527e1e
Se han modificado 1 ficheros con 1 adiciones y 1 borrados
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      tasks/samtools.wdl

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@@ -16,7 +16,7 @@ task samtools {
set -e
nt=$(nproc)
/opt/conda/bin/samtools view -@ $nt -bS ${sam} > ${bam}
/opt/conda/bin/samtools sort -@ $nt -m 2G ${bam} -o ${sorted_bam}
/opt/conda/bin/samtools sort -@ $nt -m 2GiB ${bam} -o ${sorted_bam}
/opt/conda/bin/samtools index -@ $nt ${sorted_bam}
/opt/conda/bin/samtools stats -@ $nt ${sorted_bam} > ${samstats}
/opt/conda/bin/samtools stats -@ $nt -i ${insert_size} ${sorted_bam} |grep ^IS|cut -f 2- > ${ins_size}

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