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modify the regular expression for obtaining sample ID

tags/v0.2.8
stead99 4 年之前
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3353d39878
共有 2 個檔案被更改,包括 2 行新增2 行删除
  1. +1
    -1
      tasks/fastp.wdl
  2. +1
    -1
      tasks/hisat2.wdl

+ 1
- 1
tasks/fastp.wdl 查看文件

@@ -3,7 +3,7 @@ task fastp {
File read2
String read1name=sub(basename(read1),"\\.\\S+$", "")
String read2name=sub(basename(read2),"\\.\\S+$", "")
String sample_name=sub(basename(read1),"\\_*1.\\S+$", "")
String sample_name=sub(basename(read1),"\\_R1.\\S+$", "")
String adapter_sequence
String adapter_sequence_r2
String docker

+ 1
- 1
tasks/hisat2.wdl 查看文件

@@ -2,7 +2,7 @@ task hisat2 {
File idx
File read_1P
File read_2P
String sample_name=sub(basename(read_1P),"\\_*1.\\S+$", "")
String sample_name=sub(basename(read_1P),"\\_R1.\\S+$", "")
String idx_prefix
String docker
String cluster

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