@@ -3,7 +3,7 @@ task fastp { | |||
File read2 | |||
String read1name=sub(basename(read1),"\\.\\S+$", "") | |||
String read2name=sub(basename(read2),"\\.\\S+$", "") | |||
String sample_name=sub(basename(read1),"\\_*1.\\S+$", "") | |||
String sample_name=sub(basename(read1),"\\_R1.\\S+$", "") | |||
String adapter_sequence | |||
String adapter_sequence_r2 | |||
String docker |
@@ -2,7 +2,7 @@ task hisat2 { | |||
File idx | |||
File read_1P | |||
File read_2P | |||
String sample_name=sub(basename(read_1P),"\\_*1.\\S+$", "") | |||
String sample_name=sub(basename(read_1P),"\\_R1.\\S+$", "") | |||
String idx_prefix | |||
String docker | |||
String cluster |