2 changed files with 2 additions and 2 deletions
+ 1
- 1
tasks/fastp.wdl
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| File read2 | File read2 | ||||
| String read1name=sub(basename(read1),"\\.\\S+$", "") | String read1name=sub(basename(read1),"\\.\\S+$", "") | ||||
| String read2name=sub(basename(read2),"\\.\\S+$", "") | String read2name=sub(basename(read2),"\\.\\S+$", "") | ||||
| String sample_name=sub(basename(read1),"\\_*1.\\S+$", "") | |||||
| String sample_name=sub(basename(read1),"\\_R1.\\S+$", "") | |||||
| String adapter_sequence | String adapter_sequence | ||||
| String adapter_sequence_r2 | String adapter_sequence_r2 | ||||
| String docker | String docker |
+ 1
- 1
tasks/hisat2.wdl
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| File idx | File idx | ||||
| File read_1P | File read_1P | ||||
| File read_2P | File read_2P | ||||
| String sample_name=sub(basename(read_1P),"\\_*1.\\S+$", "") | |||||
| String sample_name=sub(basename(read_1P),"\\_R1.\\S+$", "") | |||||
| String idx_prefix | String idx_prefix | ||||
| String docker | String docker | ||||
| String cluster | String cluster |
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