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tasks/tophat2.wdl
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| String docker | String docker | ||||
| String cluster | String cluster | ||||
| command { | |||||
| command <<< | |||||
| tophat2 -p 8 -G ${gtf} -o ${base} ${genome_directory}/${idx_prefix} ${read1} ${read2} | tophat2 -p 8 -G ${gtf} -o ${base} ${genome_directory}/${idx_prefix} ${read1} ${read2} | ||||
| } | |||||
| >>> | |||||
| runtime { | runtime { | ||||
| docker: docker | docker: docker |
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