revise-tophat2

tasks/tophat2.wdl

@@ -9,9 +9,9 @@ task tophat2 {
    String docker
    String cluster
 
-   command {
+   command <<<
       tophat2 -p 8 -G ${gtf} -o ${base} ${genome_directory}/${idx_prefix} ${read1} ${read2}
-   }
+   >>>
    
    runtime { 
       docker: docker