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workflow.wdl
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| @@ -21,7 +21,7 @@ workflow {{ project_name }} { | |||
| } | |||
| call tophat2.tophat2 as tophat2 { | |||
| input: baseout=baseout, read_1P=trimmomatic.read_1p, read_2P=trimmomatic.read_2p, gtf=gtf, genome_directory=genome_directory, idx_prefix=idx_prefix | |||
| input: baseout=baseout, read1=read1, read2=read2, gtf=gtf, genome_directory=genome_directory, idx_prefix=idx_prefix | |||
| } | |||
| call cufflinks.cufflinks as cufflinks { | |||
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