"idx_prefix":"tophat2", | "idx_prefix":"tophat2", | ||||
"adapter": "oss://pgx-reference-data/reference/illumina_adapter/TruSeq3-PE.fa", | "adapter": "oss://pgx-reference-data/reference/illumina_adapter/TruSeq3-PE.fa", | ||||
"fastqc_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5", | "fastqc_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5", | ||||
"fastqc_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc", | |||||
"trimmomatic_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/trimmomatic:v0.3.8", | "trimmomatic_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/trimmomatic:v0.3.8", | ||||
"trimmomatic_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc", | |||||
"tophat2_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/tophat2:2.0.14", | "tophat2_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/tophat2:2.0.14", | ||||
"tophat2_cluster": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc", | "tophat2_cluster": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc", | ||||
"cufflinks_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/cufflinks:v2.2.1" | "cufflinks_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/cufflinks:v2.2.1" | ||||
"cufflinks_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc" | |||||
} | } |
"{{ project_name }}.idx_prefix": "{{ idx_prefix }}", | "{{ project_name }}.idx_prefix": "{{ idx_prefix }}", | ||||
"{{ project_name }}.baseout": "{{ baseout }}", | "{{ project_name }}.baseout": "{{ baseout }}", | ||||
"{{ project_name }}.fastqc.docker": "{{ fastqc_docker }}", | "{{ project_name }}.fastqc.docker": "{{ fastqc_docker }}", | ||||
"{{ project_name }}.fastqc.cluster": "{ fastqc_cluster }", | |||||
"{{ project_name }}.trimmomatic.docker": "{{ trimmomatic_docker }}", | "{{ project_name }}.trimmomatic.docker": "{{ trimmomatic_docker }}", | ||||
"{{ project_name }}.trimmomatic.cluster": "{ trimmomatic_cluster }", | |||||
"{{ project_name }}.tophat2.docker": "{{ tophat2_docker }}", | "{{ project_name }}.tophat2.docker": "{{ tophat2_docker }}", | ||||
"{{ project_name }}.tophat2.cluster": "{{ tophat2_cluster }}", | "{{ project_name }}.tophat2.cluster": "{{ tophat2_cluster }}", | ||||
"{{ project_name }}.cufflinks.docker": "{{ cufflinks_docker }}" | "{{ project_name }}.cufflinks.docker": "{{ cufflinks_docker }}" | ||||
"{{ project_name }}.cufflinks.cluster": "{ cufflinks_cluster }", | |||||
} | } |