add-cluster

defaults

@@ -4,8 +4,11 @@
   "idx_prefix":"tophat2",
   "adapter": "oss://pgx-reference-data/reference/illumina_adapter/TruSeq3-PE.fa",
   "fastqc_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5",
+  "fastqc_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc",
   "trimmomatic_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/trimmomatic:v0.3.8",
+  "trimmomatic_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc",
   "tophat2_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/tophat2:2.0.14",
   "tophat2_cluster": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc",
   "cufflinks_docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/cufflinks:v2.2.1"
+  "cufflinks_cluster": "OnDemand bcs.a2.large img-ubuntu-vpc"
 }

inputs

@@ -7,8 +7,11 @@
     "{{ project_name }}.idx_prefix": "{{ idx_prefix }}",
     "{{ project_name }}.baseout": "{{ baseout }}",
     "{{ project_name }}.fastqc.docker": "{{ fastqc_docker }}",
+    "{{ project_name }}.fastqc.cluster": "{ fastqc_cluster }",
     "{{ project_name }}.trimmomatic.docker": "{{ trimmomatic_docker }}",
+    "{{ project_name }}.trimmomatic.cluster": "{ trimmomatic_cluster }",
     "{{ project_name }}.tophat2.docker": "{{ tophat2_docker }}",
     "{{ project_name }}.tophat2.cluster": "{{ tophat2_cluster }}",
     "{{ project_name }}.cufflinks.docker": "{{ cufflinks_docker }}"
+    "{{ project_name }}.cufflinks.cluster": "{ cufflinks_cluster }",
 }