修正错误

修正 other small RNA 和 mRNA 片段数对统计错误

tasks/ReadStats.wdl

@@ -47,7 +47,7 @@ task ReadStats {
         cat ${in_sam_align_RNA} | grep -v '@' | awk '($2!=4)' | cut -f 3 | sed 's/.*;//g' | awk '{a[$1]++}END{for(i in a){printf "%s\t%d\n",i,a[i]}}' > $groupedReadCount
 
 
-        if [ $(cat $groupedReadCount | grep '^mRNA' | wc -l ) -gt  0]
+        if [ $(cat $groupedReadCount | grep '^mRNA' | wc -l ) -gt  0 ]
         then
             n_mRNA=$(cat $groupedReadCount | grep '^mRNA' | cut -f 2 )
         else
@@ -75,7 +75,7 @@ task ReadStats {
             n_YRNA=0
         fi
 
-        if [$(cat $groupedReadCount | grep -E '^misc_RNA|small|guide_RNA|vault_RNA' | wc -l ) -gt 0 ]
+        if [ $(cat $groupedReadCount | grep -E '^misc_RNA|small|guide_RNA|vault_RNA' | wc -l ) -gt 0 ]
         then
             n_otsmall=$(cat $groupedReadCount | grep -E '^misc_RNA|small|guide_RNA|vault_RNA' | cut -f 2 | awk '{sum+=$1}END{print sum}')
         else