miRNAseq/inputs

{
    "{{ project_name }}.sample_id": "{{ sample_id }}",
    "{{ project_name }}.raw_fastq": "{{ raw_fastq }}",
    "{{ project_name }}.sequencing_length": "{{ sequencing_length }}",
    "{{ project_name }}.adapter_seq": "{{ adapter_seq }}",
    "{{ project_name }}.randomBase_in_adapter": "{{ randomBase_in_adapter }}",
    "{{ project_name }}.qualified_quality_phred": "20",
    "{{ project_name }}.unqualified_percent_limit": "20",
    "{{ project_name }}.n_base_limit": "2",
    "{{ project_name }}.length_required": "16",
    "{{ project_name }}.max_mismatch_allowed": "1",
    "{{ project_name }}.dir_index_miRNA": "oss://pgx-reference-data/miRBase/Release22.1/mature/index_bowtie/",
    "{{ project_name }}.prefix_index_miRNA": "mature.human.U2T.expand",
    "{{ project_name }}.dir_index_preMiRNA": "oss://pgx-reference-data/miRBase/Release22.1/hairpin/index_bowtie/",
    "{{ project_name }}.prefix_index_preMiRNA": "hairpin.human.U2T",
    "{{ project_name }}.dir_index_piRNA": "oss://pgx-reference-data/piRBase/",
    "{{ project_name }}.prefix_index_piRNA": "piRNA_piRBase2.0_hsa",
    "{{ project_name }}.dir_index_tRNA": "oss://pgx-reference-data/tRNA_UCSC/index_bowtie/",
    "{{ project_name }}.prefix_index_tRNA": "tRNA",
    "{{ project_name }}.dir_index_RNA": "oss://pgx-reference-data/GRCh38.p12_NCBI/Transcriptome/index_bowtie/",
    "{{ project_name }}.prefix_index_RNA": "RNA",
    "{{ project_name }}.dir_index_hg38": "oss://pgx-reference-data/GRCh38.p12_NCBI/Genome/index_bowtie/",
    "{{ project_name }}.prefix_index_hg38": "GRCh.p12_genomic",
    "{{ project_name }}.docker_fastqc": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5",
    "{{ project_name }}.docker_fastp": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastp:0.19.6",
    "{{ project_name }}.docker_bowtie": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/bowtie:1.2.2-20190326",
    "{{ project_name }}.cluster_config": "OnDemand ecs.sn2.large img-ubuntu-vpc",
    "{{ project_name }}.disk_size": "200"
}