chenqingwang
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rmats
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For RNA-seq data, from bam/fastq to AS sites files.
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rmats/defaults

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  1. {   

  2.     "reference_gtf_file":"oss://pgx-reference-data/reference/rmats/Homo_sapiens.GRCh38.103.gtf",

  3.     "CSTAT":"0.0001",

  4.     "rmats_docker":"registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/rmats:4.1.1",

  5.     "rmats_cluster":"OnDemand bcs.a2.large img-ubuntu-vpc",

  6.     "disk_size":"200"

  7.     }