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更新 'tasks/rmats.wdl'

tags/v4.1.1
chenqingwang 4 years ago
parent
commit
e07286d125
1 changed files with 8 additions and 4 deletions
  1. +8
    -4
      tasks/rmats.wdl

+ 8
- 4
tasks/rmats.wdl View File

@@ -1,7 +1,11 @@
task rmats {
String sample_id
File b1_txt
File b2_txt
File b1_1
File b1_2
File b1_3
File b2_1
File b2_2
File b2_3
File reference_gtf_file

@@ -17,8 +21,8 @@ task rmats {

mkdir -p ${sample_id}/output
mkdir -p ${sample_id}/tmp_output
python /usr/local/bin/rmats.py --b1 ${b1_txt} \
--b2 ${b2_txt} \
python /usr/local/bin/rmats.py --b1 ${b1_1},${b1_2},${b1_3} \
--b2 ${b2_1},${b2_2},${b2_3}\
--gtf ${reference_gtf_file} \
-t paired \
--readLength 150 \

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