@@ -1,7 +1,11 @@ | |||
task rmats { | |||
String sample_id | |||
File b1_txt | |||
File b2_txt | |||
File b1_1 | |||
File b1_2 | |||
File b1_3 | |||
File b2_1 | |||
File b2_2 | |||
File b2_3 | |||
File reference_gtf_file | |||
@@ -17,8 +21,8 @@ task rmats { | |||
mkdir -p ${sample_id}/output | |||
mkdir -p ${sample_id}/tmp_output | |||
python /usr/local/bin/rmats.py --b1 ${b1_txt} \ | |||
--b2 ${b2_txt} \ | |||
python /usr/local/bin/rmats.py --b1 ${b1_1},${b1_2},${b1_3} \ | |||
--b2 ${b2_1},${b2_2},${b2_3}\ | |||
--gtf ${reference_gtf_file} \ | |||
-t paired \ | |||
--readLength 150 \ |