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README.md
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| $ source activate choppy (open-choppy-env) | $ source activate choppy (open-choppy-env) | ||||
| # 第一次安装 | # 第一次安装 | ||||
| $ choppy install chenqingwang/rMATS | |||||
| $ choppy install chenqingwang/rmats | |||||
| # 非第一次安装 | # 非第一次安装 | ||||
| $ choppy install chenqingwang/rMATS -f | |||||
| $ choppy install chenqingwang/rmats -f | |||||
| # 查询已安装APP | # 查询已安装APP | ||||
| $ choppy apps | $ choppy apps | ||||
| ``` | ``` | ||||
| # 准备 samples.csv 文件 | # 准备 samples.csv 文件 | ||||
| $ choppy samples chenqingwang/rMATS-latest > samples.csv | |||||
| $ choppy samples chenqingwang/rmats-latest > samples.csv | |||||
| # 准备无默认参数的samples.csv 文件 | # 准备无默认参数的samples.csv 文件 | ||||
| choppy samples --no-default chenqingwang/rMATS-latest > samples.csv | |||||
| choppy samples --no-default chenqingwang/rmats-latest > samples.csv | |||||
| # 提交任务 | # 提交任务 | ||||
| $ choppy batch chenqingwang/rMATS-latest samples.csv -p Your_project_name -l Your_label | |||||
| $ choppy batch chenqingwang/rmats-latest samples.csv -p Your_project_name -l Your_label | |||||
| # 查询任务运行状况 | # 查询任务运行状况 | ||||
| $ choppy query -L Your_label | grep "status" | $ choppy query -L Your_label | grep "status" |
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