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workflow {{ project_name }} { |
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workflow {{ project_name }} { |
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String sample_id |
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String sample_id |
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File b1_1 |
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File b1_2 |
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File b1_3 |
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File b2_1 |
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File b2_2 |
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File b2_3 |
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File b1_txt |
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File b2_txt |
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File reference_gtf_file |
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File reference_gtf_file |
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call rmats.rmats as rmats { |
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call rmats.rmats as rmats { |
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input: |
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input: |
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b1_1 = b1_1, |
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b1_2 = b1_2, |
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b1_3 = b1_3, |
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b2_1 = b2_1, |
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b2_2 = b2_2, |
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b2_3 = b2_3, |
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b1_txt = b1_txt, |
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b2_txt = b2_txt, |
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reference_gtf_file = reference_gtf_file, |
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reference_gtf_file = reference_gtf_file, |
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sample_id = sample_id, |
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sample_id = sample_id, |
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docker = rmats_docker, |
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docker = rmats_docker, |