workflow {{ project_name }} { | workflow {{ project_name }} { | ||||
String sample_id | String sample_id | ||||
File b1_txt | |||||
File b2_txt | |||||
File bam1 | |||||
File bam2 | |||||
File reference_gtf_file | File reference_gtf_file | ||||
call rmats.rmats as rmats { | call rmats.rmats as rmats { | ||||
input: | input: | ||||
b1_txt = b1_txt, | |||||
b2_txt = b2_txt, | |||||
bam1 = bam1, | |||||
bam2 = bam2, | |||||
reference_gtf_file = reference_gtf_file, | reference_gtf_file = reference_gtf_file, | ||||
sample_id = sample_id, | sample_id = sample_id, | ||||
docker = rmats_docker, | docker = rmats_docker, |