set -o pipefail | set -o pipefail | ||||
set -e | set -e | ||||
mkdir -p ${sample_id} | |||||
mkdir -p ${sample_id}/output | |||||
mkdir -p ${sample_id}/tmp_output | |||||
python /usr/local/bin/rmats.py --b1 ${b1_txt} \ | python /usr/local/bin/rmats.py --b1 ${b1_txt} \ | ||||
--b2 ${b2_txt} \ | --b2 ${b2_txt} \ | ||||
--gtf ${reference_gtf_file} \ | --gtf ${reference_gtf_file} \ |