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workflow.wdl
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| input: | input: | ||||
| sample_id=sample_id, | sample_id=sample_id, | ||||
| in_fastq=ReadFilter.out_fastq, | in_fastq=ReadFilter.out_fastq, | ||||
| refname="Hg38",dir_index=dir_index_hg38,prefix_index=prefix_index_hg38, | |||||
| refname="RN7",dir_index=dir_index_hg38,prefix_index=prefix_index_hg38, | |||||
| max_mismatch_allowed=max_mismatch_allowed, | max_mismatch_allowed=max_mismatch_allowed, | ||||
| docker=docker_bowtie, cluster_config=cluster_config, disk_size=disk_size | docker=docker_bowtie, cluster_config=cluster_config, disk_size=disk_size | ||||
| } | } |
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