更新 'workflow.wdl'

workflow.wdl

 
     File dir_index_miRNA
     String prefix_index_miRNA
-    File dir_index_hg38
-    String prefix_index_hg38
+    File dir_index_rn7
+    String prefix_index_rn7
 
     String docker_fastqc
     String docker_fastp
             docker=docker_bowtie, cluster_config=cluster_config, disk_size=disk_size
     }
 
-    call Align.AlignToBothStrand as Align2Hg38 {
+    call Align.AlignToBothStrand as Align2rn7 {
         input:
             sample_id=sample_id,
             in_fastq=ReadFilter.out_fastq,
-            refname="Hg38",dir_index=dir_index_hg38,prefix_index=prefix_index_hg38,
+            refname="rn7",dir_index=dir_index_rn7,prefix_index=prefix_index_rn7,
             max_mismatch_allowed=max_mismatch_allowed,
             docker=docker_bowtie, cluster_config=cluster_config, disk_size=disk_size
     }
         input:
             sample_id=sample_id,
             in_log_trimAdatper=TrimAdapt.out_log,in_log_readFilter=ReadFilter.out_log,
-            in_log_align_miRNA=Align2miRNA.out_log,in_log_align_hg38=Align2Hg38.out_log,
+            in_log_align_miRNA=Align2miRNA.out_log,in_log_align_rn7=Align2rn7.out_log,
             cluster_config=cluster_config,disk_size=disk_size
     }
 }