更新 'workflow.wdl'

workflow.wdl

     Int length_required1
     Int disable_quality_filtering
     File idx
-    File Trim_R1
-    File Trim_R2
     String idx_prefix
     String pen_intronlen
     String hisat2_docker
     Int max_intronlen
     Int maxins
     Int minins	
-    File sam
-    String bam = sample_id + ".bam"
-    String sorted_bam = sample_id + ".sorted.bam"
-    String percent_bam = sample_id + ".percent.bam"
-    String sorted_bam_index = sample_id + ".sorted.bam.bai"
     String ins_size = sample_id + ".ins_size"
     String samtools_docker
     String samtools_cluster	
     Int insert_size	
-    File bam_file
     File lnc_gtf_file = "lncRNAKB_hg38_v7.gtf"
 	String gtf_dir = "oss://pgx-reference-data/reference/subread/"
     String subread_docker