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@@ -20,9 +20,7 @@ |
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"{{ project_name }}.qualified_quality_phred": "{{ qualified_quality_phred }}", |
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"{{ project_name }}.length_required1": "{{ length_required1 }}", |
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"{{ project_name }}.disable_quality_filtering": "{{ disable_quality_filtering }}", |
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"{{ project_name }}.idx": "{{ idx }}", |
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"{{ project_name }}.Trim_R1": "{{ Trim_R1 }}", |
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"{{ project_name }}.Trim_R2": "{{ Trim_R2 }}", |
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"{{ project_name }}.idx": "{{ idx }}", |
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"{{ project_name }}.idx_prefix": "{{ idx_prefix }}", |
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"{{ project_name }}.pen_intronlen": "{{ pen_intronlen }}", |
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"{{ project_name }}.hisat2_docker": "{{ hisat2_docker }}", |
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@@ -33,15 +31,10 @@ |
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"{{ project_name }}.max_intronlen": "{{ max_intronlen }}", |
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"{{ project_name }}.maxins": "{{ maxins }}", |
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"{{ project_name }}.minins": "{{ minins }}", |
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"{{ project_name }}.sam": "{{ sam }}", |
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"{{ project_name }}.sorted_bam": "{{ sorted_bam }}", |
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"{{ project_name }}.percent_bam ": "{{ percent_bam }}", |
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"{{ project_name }}.sorted_bam_index": "{{ sorted_bam_index }}", |
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"{{ project_name }}.ins_size": "{{ ins_size }}", |
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"{{ project_name }}.samtools_docker": "{{ samtools_docker }}", |
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"{{ project_name }}.samtools_cluster": "{{ samtools_cluster }}", |
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"{{ project_name }}.insert_size": "{{ insert_size }}", |
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"{{ project_name }}.bam_file": "{{ bam_file }}", |
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"{{ project_name }}.lnc_gtf_file": "{{ lnc_gtf_file }}", |
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"{{ project_name }}.subread_docker": "{{ subread_docker }}", |
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"{{ project_name }}.subread_cluster": "{{ subread_cluster }}", |