更新 'tasks/featureCounts.wdl'

tasks/featureCounts.wdl

@@ -1,5 +1,7 @@
 task featureCounts {
     File bam_file
+	File lnc_gtf_file
+    String gtf_dir
     String sample_id
     String docker
     String cluster
@@ -7,7 +9,7 @@ task featureCounts {
 
     
     command <<<
-        featureCounts -T 4 -t exon -g gene_id -a oss://pgx-reference-data/reference/subread/lncRNAKB_hg38_v7.gtf -s 0 -p -o ${sample_id}.genefeaturecount.txt ${bam_file}
+        featureCounts -T 4 -t exon -g gene_id -a ${gtf_dir}/${lnc_gtf_file} -s 0 -p -o ${sample_id}.genefeaturecount.txt ${bam_file}
     >>>
 
     runtime {