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tasks/featureCounts.wdl
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| @@ -7,7 +7,7 @@ task featureCounts { | |||
| command <<< | |||
| featureCounts -T 4 -t exon -g gene_id -a oss://pgx-reference-data/reference/subread/lncRNAKB_hg38_v7.gtf -s 0 -p -o $sample_id.genefeaturecount.txt $bam_file | |||
| featureCounts -T 4 -t exon -g gene_id -a oss://pgx-reference-data/reference/subread/lncRNAKB_hg38_v7.gtf -s 0 -p -o ${sample_id}.genefeaturecount.txt ${bam_file} | |||
| >>> | |||
| runtime { | |||
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