променени са 1 файла, в които са добавени 1 реда и са изтрити 2 реда
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tasks/featureCounts.wdl
Целия файл
| task featureCounts { | task featureCounts { | ||||
| File bam_file | File bam_file | ||||
| File lnc_gtf_file | File lnc_gtf_file | ||||
| String gtf_dir | |||||
| String sample_id | String sample_id | ||||
| String docker | String docker | ||||
| String cluster | String cluster | ||||
| command <<< | command <<< | ||||
| featureCounts -T 4 -t exon -g gene_id -a ${gtf_dir}${lnc_gtf_file} -s 0 -p -o ${sample_id}.genefeaturecount.txt ${bam_file} | |||||
| featureCounts -T 4 -t exon -g gene_id -a ${lnc_gtf_file} -s 0 -p -o ${sample_id}.genefeaturecount.txt ${bam_file} | |||||
| >>> | >>> | ||||
| runtime { | runtime { |
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