1 gewijzigde bestanden met toevoegingen van 1 en 2 verwijderingen
+ 1
- 2
tasks/featureCounts.wdl
Bestand weergeven
| @@ -1,7 +1,6 @@ | |||
| task featureCounts { | |||
| File bam_file | |||
| File lnc_gtf_file | |||
| String gtf_dir | |||
| String sample_id | |||
| String docker | |||
| String cluster | |||
| @@ -9,7 +8,7 @@ task featureCounts { | |||
| command <<< | |||
| featureCounts -T 4 -t exon -g gene_id -a ${gtf_dir}${lnc_gtf_file} -s 0 -p -o ${sample_id}.genefeaturecount.txt ${bam_file} | |||
| featureCounts -T 4 -t exon -g gene_id -a ${lnc_gtf_file} -s 0 -p -o ${sample_id}.genefeaturecount.txt ${bam_file} | |||
| >>> | |||
| runtime { | |||
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