更新 'tasks/suppa2.wdl'

ISR

tasks/suppa2.wdl

@@ -15,7 +15,7 @@ task suppa2{
         set -o pipefail
         set -e
 
-        /software/salmon-1.5.2_linux_x86_64/bin/salmon quant -i ${salmon_index} -l A --gcBias -1 ${fastq1} -2 ${fastq2} -p 16 -o ./${sample_id}_salmon
+        /software/salmon-1.5.2_linux_x86_64/bin/salmon quant -i ${salmon_index} -l ISR --gcBias -1 ${fastq1} -2 ${fastq2} -p 16 -o ./${sample_id}_salmon
         multipleFieldSelection.py -i ./${sample_id}_salmon/quant.sf -k 1 -f 4 -o ${sample_id}_iso_tpm.txt
         sed 's@|ENSG.*|@@' ${sample_id}_iso_tpm.txt > ${sample_id}_iso_tpm_formatted.txt
         suppa.py psiPerEvent -i ${suppa2_ioe} -e ${sample_id}_iso_tpm_formatted.txt -o ${sample_id}_events