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README.md
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| ### README.md | |||||
| > Author: Qingwang Chen | > Author: Qingwang Chen | ||||
| > | > | ||||
| > Email: qwch20@fudan.edu.cn | > Email: qwch20@fudan.edu.cn | ||||
| - choppy | - choppy | ||||
| - Ali-Cloud | - Ali-Cloud | ||||
| - | |||||
| ``` | ``` | ||||
| # 激活choppy环境 | # 激活choppy环境 | ||||
| $ source activate choppy (open-choppy-env) | $ source activate choppy (open-choppy-env) | ||||
| # 第一次安装 | # 第一次安装 | ||||
| $choppy install chenqingwang/bam-readcount | |||||
| $ choppy install chenqingwang/bam-readcount | |||||
| # 非第一次安装 | # 非第一次安装 | ||||
| $choppy install chenqingwang/bam-readcount -f | |||||
| $ choppy install chenqingwang/bam-readcount -f | |||||
| # 查询已安装APP | # 查询已安装APP | ||||
| $ choppy apps | $ choppy apps | ||||
| ``` | ``` | ||||
| #### Quick Start | |||||
| #### Quick Start | |||||
| ``` | |||||
| # 准备 samples.csv 文件 | |||||
| $ choppy samples junshang/bedtools-latest > samples.csv | |||||
| # 提交任务 | |||||
| $ choppy batch junshang/bedtools-latest samples.csv -p Your_project_name -l Your_label | |||||
| # 查询任务运行状况 | |||||
| $ choppy query -L Your_label | grep "status" | |||||
| # 查询失败任务 | |||||
| $ choppy search -s Failed -p Test_bamreadcount_chenqingwang_20201016 -u chenqingwang --short-format | |||||
| # 结果文件地址 | |||||
| $ oss://choppy-cromwell-result/test-choppy/Your_project_name/ |
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