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@@ -1,3 +1,6 @@ |
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### README.md |
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> Author: Qingwang Chen |
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> |
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> Email: qwch20@fudan.edu.cn |
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@@ -8,18 +11,35 @@ |
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- choppy |
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- Ali-Cloud |
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- |
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``` |
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# 激活choppy环境 |
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$ source activate choppy (open-choppy-env) |
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# 第一次安装 |
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$choppy install chenqingwang/bam-readcount |
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$ choppy install chenqingwang/bam-readcount |
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# 非第一次安装 |
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$choppy install chenqingwang/bam-readcount -f |
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$ choppy install chenqingwang/bam-readcount -f |
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# 查询已安装APP |
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$ choppy apps |
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``` |
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#### Quick Start |
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#### Quick Start |
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``` |
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# 准备 samples.csv 文件 |
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$ choppy samples junshang/bedtools-latest > samples.csv |
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# 提交任务 |
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$ choppy batch junshang/bedtools-latest samples.csv -p Your_project_name -l Your_label |
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# 查询任务运行状况 |
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$ choppy query -L Your_label | grep "status" |
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# 查询失败任务 |
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$ choppy search -s Failed -p Test_bamreadcount_chenqingwang_20201016 -u chenqingwang --short-format |
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# 结果文件地址 |
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$ oss://choppy-cromwell-result/test-choppy/Your_project_name/ |