更新 'tasks/samtools.wdl'

tasks/samtools.wdl

@@ -11,6 +11,7 @@ task samtools {
        set -o pipefail
        set -e
 
+       cp ${bam_file} ${bam_id}       
        samtools index ${bam_file}
 
     >>>
@@ -23,6 +24,7 @@ task samtools {
     }
 
     output {
+      File bam = "$(bam_id)"      
       File bam_index = "$(bam_id).bai"
     }