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tasks/samtools.wdl
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| @@ -13,7 +13,7 @@ task samtools { | |||
| mkdir -p /cromwell_root/tmp/ | |||
| cp ${bam_file} /cromwell_root/tmp/ | |||
| /opt/conda/bin/samtools index /cromwell_root/tmp/${bam_id} | |||
| /opt/conda/bin/samtools index -b /cromwell_root/tmp/${bam_id} | |||
| >>> | |||
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