for i in ${sep=" " bam} | for i in ${sep=" " bam} | ||||
do | do | ||||
echo $i >> bam.txt | |||||
echo $i >> alignment.txt | |||||
done | done | ||||
sed ':a ; N;s/\n/,/ ; t a ; ' bam.txt > alignment.txt | |||||
for i in ${sep=" " bai} | for i in ${sep=" " bai} | ||||
do | do | ||||
echo $i >> bai.txt | |||||
echo $i >> alignment_bai.txt | |||||
done | done | ||||
sed ':a ; N;s/\n/,/ ; t a ; ' bai.txt > alignment_bai.txt | |||||
for i in ${sep=" " pickle} | for i in ${sep=" " pickle} | ||||
do | do |