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tasks/spladder_merge.wdl
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| @@ -17,7 +17,7 @@ task spladder_merge { | |||
| mkdir -p ${sample_id}/spladder_out/spladder | |||
| ls ${bam} | grep bam$ > alignment.txt | |||
| ls ${bam} | grep bai$ alignment_bai.txt | |||
| ls ${bam} | grep bai$ > alignment_bai.txt | |||
| ln -s ${pickle}/*.pickle ${sample_id}/spladder_out/spladder/ | |||
| ls ${sample_id}/spladder_out/spladder/ >> pickle.txt | |||
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